Vierock Lab
Junior Research Group for Subcellular Optogenetics
We explore and develop new methods to control subcellular processes by light.
Looking for motivated students and new colleagues.
Contact: johannes.vierock (at) charite.de
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Research
Optogenetics is a cutting-edge research method that uses light sensors from plants, bacteria, and animals, introduced into living cells via advanced genetic techniques, to control molecular processes with the precision of light. In neuroscience, this technology allows for the precise activation and deactivation of individual nerve cells in living animals, facilitating targeted studies of cause-and-effect relationships in intact neural networks. Optogenetics is also demonstrating its clinical potential, as exemplified by a groundbreaking translational study where the expression of red light-activated ion channels in retinal neuronal cells restored basic vision in a previously blind patient.
Our research aims to delve deeper into the inner workings of cells and develop new approaches to control subcellular processes with light. Various organelles are responsible for the cell's structure, recycling, and energy balance, and even minor disruptions in these natural physiological processes can lead to significant health issues. Subcellular compartments also play a crucial role in different signaling pathways, which are essential for complex neurobiological processes such as memory consolidation and require precise coordination. We develop methods to specifically alter the reaction conditions at the level of individual organelles and compartments, to mimic disease states for basic research or to treat disease conditions for future medical applications. At the same time, we are creating new molecular tools to address different signaling pathways with high specificity, locality, and temporal resolution, and to combine them using different wavelengths of light. New light sensors or photoreceptors can be discovered metagenomically or developed biosynthetically, representing fascinating research subjects in terms of their structure and function. In our lab, we aim to understand their molecular mechanisms through a combination of biophysical methods, ranging from patch-clamp electrophysiology to absorption spectroscopy.
We share new optogenetic tools with the global research community, along with protocols for their proper use, thereby laying the foundation for new therapeutic approaches to a range of neurodegenerative diseases.
Alumni
Alejandro Castro Scalise -> Larkum Lab - Humboldt University of Berlin
Hanna Scheffold -> Erasmus
Niklas Meyer -> Masseck Lab - University of Cologne
Selected Publications
Embedded System for Responsive Optogenetic Control of Spontaneous Seizures in a Preclinical Temporal Lobe Epilepsy Model. S Lasure, L De Schaepmeester, S Caestecker, J Spanoghe, M Vergaelen, R Verplancke, J Vierock, R Raedt and P Bauwens Proceedings of the 18th International Joint Conference on Biomedical Engineering Systems and Technologies - BIODEVICES, 2025
Potassium-selective channelrhodopsins can exert hyper- or depolarizing effects in excitable cells ofCaenorhabditis elegans, depending on experimental condition C Ruse, J Liewald, M Seidenthal, L Tillert, J Vierock, A Gottschalk - Genetics, 2025
WiChR, a highly potassium-selective channelrhodopsin for low-light one-and two-photon inhibition of excitable cells J Vierock*, E Peter*, C Grimm*, A Rozenberg, I-W Chen, L Tillert, A Castro Scalise, M Casini, S Augustin, D Tanese, B Forget, R Peyronnet, F Schneider-Warme, V Emiliani, O Béjà, P Hegemann - Science Advances, 2022
Calcium-permeable channelrhodopsins for the photocontrol of calcium signalling R Fernandez Lahore, N Pampaloni, E Peter, M Heim, L Tillert, J Vierock, J Oppermann, J Walther, D Schmitz, D Owald, A Plested, B Rost, P Hegemann - Nature Communications, 2022
Optogenetics for light control of biological systems V Emiliani, E Entcheva, R Hedrich, P Hegemann, K Konrad, C Lüscher, M Mahn, Z Pan, R Sims, J Vierock, O Yizhar - Nature Reviews Methods Primers, 2022
Rhodopsin-bestrophin fusion proteins from unicellular algae form gigantic pentameric ion channels A Rozenberg*, I Kaczmarczyk*, D Matzov*, J Vierock*, T Nagata, M Sugiura, K Katayama, Y Kawasaki, M Konno, Y Nagasaka, M Aoyama, I Das, E Pahima, J Church, S Adam, V Borin, A Chazan, S Augustin, J Wietek, J Dine, Y Peleg, A Kawanabe, Y Fujiwara, O Yizhar, M Sheves, I Schapiro, Y Furutani, H Kandori, K Inoue, P Hegemann, O Beja, M Shalev-Benami - Nature Structural & Molecular Biology, 2022
BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons J Vierock*, S Rodriguez-Rozada*, A Dieter, F Pieper, R Sims, F Tenedini, A Bergs, I Bendifallah, F Zhou, N Zeitzschel, J Ahlbeck, S Augustin, K Sauter, E Papagiakoumou, A Gottschalk, P Soba, V Emiliani, A Engel, P Hegemann, J Wiegert - Nature communications, 2021
Unifying photocycle model for light adaptation and temporal evolution of cation conductance in channelrhodopsin-2 J Kuhne*, J Vierock*, S Alexander Tennigkeit, M Dreier, J Wietek, D Petersen, K Gavriljuk, S El-Mashtoly, P Hegemann, K Gerwert - PNAS, 2019
Crystal structure of the red light-activated channelrhodopsin Chrimson K Oda*, J Vierock*, S Oishi, S Rodriguez-Rozada, R Taniguchi, K Yamashita, J Wiegert, T Nishizawa, P Hegemann, O Nureki - Nature communications, 2018
The microbial opsin family of optogenetic tools F Zhang*, J Vierock*, O Yizhar, L Fenno, S Tsunoda, A Kianianmomeni, M Prigge, A Berndt, J Cushman, J Polle, J Magnuson, P Hegemann, K Deisseroth - Cell, 2011
For the full publication list please follow this link.









